Build cluster tree for anndata objects

This is a stripped down version of Seurat::BuildClusterTree for anndata objects. It takes the same arguments as the Seurat function.

Usage

BuildClusterTree2(
  object,
  features = NULL,
  dims = NULL,
  reduction = "X_pca",
  clust_column = "leiden"
)

Arguments

object

anndata object

features

genes to use for building cluster tree

dims

dimensions to use. This is only used if reduction is pca.

reduction

reduction to use for cluster tree

clust_column

column to use for grouping cells

Value

phylogenetic tree