.. _changelog:

Changelog
=========

2024-09-10
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- Added more info on R resource descriptions
- Split scRNA-seq off into its own section (it was previously under R)
- Fixed broken links


2024-01-08
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New section on using RStudio Server on Biowulf (NIH only)

2022-12-23
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- new page on ssh
- new page on rsync

2022-12-13
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- New page on Galaxy (thanks @lillypi)

2022-10-27
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- Added a new section on conda

2021-08-30
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- Added change log
- Added links to Bitbucket's git tutorials to the git page
- Reviewed the Harvard Bioinformatics Core links on the RNA-seq page and
  updated as appropriate
- Added info on RPKM etc on the RNA-seq page
- On the R page, added notes and resources on scRNA-seq because that's why many
  people want to learn R these days

2021-08-11
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- Added new page on GitLab CI/CD

2021-02-13
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- A round of edits and clarification on choosing R or Python
- Added some intermediate Bash links
- Spelled out the "10 simple rules for biologists learning to program" on the
  first steps page


2020-08-10
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- Updated git section

2020-06-18
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- Added a link about factors in R

2020-06-10
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- Add resources for experimental design on RNA-seq page

2020-05-08
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- Add link to strand-specific protocols on RNA-seq page

2020-05-04
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- Add link to model formulas in R on the R page

2020-04-02
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- Update Biowulf page with help topics like mounting drives locally (and the
  limitations thereof), ``/dev/shm``, fastq-dump, SSH keys, squeue output, and
  more.

2020-02-17
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- Add levels of skills to R page
- Overhaul Python page, including reformatting skills
- Updated the making-your-linux-life-easier page: recommending ``rg`` instead
  of ``ag``, ``visidata`` instead of ``tabview``.
- Major overhaul of many pages, including reorganization and the addition of
  "TODO" items.

2020-01-05
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- Initial version