Add metadata to counts data frame
Examples
library(DESeq2)
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# make example DESeq data set
dds <- makeExampleDESeqDataSet()
# extract counts and metadata
df <- assay(dds)
coldata <- colData(dds)
# get gene counts df
counts_df <- get_gene_counts(dds, paste0('gene', seq_len(10)))
# add metadata
counts_df <- add_metadata(counts_df, coldata, exclude.intgroups=NULL)