A degPatterns object for differentially expressed genes in the dexamethasone treatment comparison.

A degPatterns object for differentially expressed genes in the dexamethasone treatment comparison.

Format

A degPatterns object, generated with the degPatterns function from the DEGreport package.

Details

This degPatterns object was created to test for groups of coexpressed genes in the top 100 differentially expressed genes from the dexamethasone treatment comparison.

Details on how this object has been created are included in the create_carnation_data.R script, included in the scripts folder of the Carnation package.

References

Himes BE, Jiang X, Wagner P, Hu R, Wang Q, Klanderman B, Whitaker RM, Duan Q, Lasky-Su J, Nikolos C, Jester W, Johnson M, Panettieri R Jr, Tantisira KG, Weiss ST, Lu Q. “RNA-Seq Transcriptome Profiling Identifies CRISPLD2 as a Glucocorticoid Responsive Gene that Modulates Cytokine Function in Airway Smooth Muscle Cells.” PLoS One. 2014 Jun 13;9(6):e99625. PMID: 24926665. GEO: GSE52778