An enrichResult object for differentially expressed genes in the dexamethasone treatment comparison.
Source: R/carnation-data.R
eres_dex.RdAn enrichResult object for differentially expressed genes in the
dexamethasone treatment comparison.
Format
An enrichResult object, generated with the enrichGO function
from the clusterProfiler package.
Details
This enrichResult object was created to test for functional
enrichment using the GO Biological Process (BP) ontology on the top
100 differentially expressed genes from the dexamethasone treatment
comparison.
Details on how this object has been created are included in the
create_carnation_data.R script, included in the scripts folder of the
Carnation package.
References
Himes BE, Jiang X, Wagner P, Hu R, Wang Q, Klanderman B, Whitaker RM, Duan Q, Lasky-Su J, Nikolos C, Jester W, Johnson M, Panettieri R Jr, Tantisira KG, Weiss ST, Lu Q. “RNA-Seq Transcriptome Profiling Identifies CRISPLD2 as a Glucocorticoid Responsive Gene that Modulates Cytokine Function in Airway Smooth Muscle Cells.” PLoS One. 2014 Jun 13;9(6):e99625. PMID: 24926665. GEO: GSE52778