Plot a degPatterns object — get

This function plots a degPatterns object using degPlotCluster

Usage

get_degplot(
  obj,
  time,
  color = NULL,
  cluster_column = "cluster",
  cluster_to_show,
  x_order,
  points = TRUE,
  boxes = TRUE,
  smooth = "smooth",
  lines = TRUE,
  facet = TRUE,
  prefix_title = "Cluster ",
  genes_to_label = NULL
)

Arguments

obj: degPatterns object
time: metadata variable to plot on x-axis
color: variable to color plot
cluster_column: column to use for grouping genes
cluster_to_show: which clusters to show in plot
x_order: order of x-axis values
points: boolean, show samples on plot? Default: TRUE
boxes: boolean, show boxes on plot? Default: TRUE
smooth: what type of trendline to use? can be 'smooth' (default) or 'line'.
lines: show lines joining samples? Default: TRUE
facet: boolean, should plot be faceted? Default: TRUE
prefix_title: string, prefix for facet titles
genes_to_label: genes to label on plot

Value

ggplot handle